FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205998

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205998
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99696271
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG10581391.0613626662124604No Hit
TACCACCACTCGAGAG2306860.23138879487277914No Hit
CAGGCTTCTGGATGGT2283130.2290085654256818No Hit
CCGTTACTGTAGGCGA1938790.19446966075591735No Hit
GAGGGATACGACCGAA1881650.18873825280787082No Hit
TCGCGGTGATGCTACA1725670.17309273282648655No Hit
ACTGGAGGAATTCGGT1666300.16713764549929855No Hit
CATTGGAACCGCAACC1596410.16012735320862703No Hit
AAGACAAACACCGTTA1572750.15775414508733232No Hit
GGTACCTCTCGATTGT1565160.1569928327610167No Hit
TGTAAGCTGAGACTTC1562830.1567591229164429No Hit
ATTCCAACTTTTGTCT1526470.1531120456852393No Hit
CGATACAACTAGACAA1516120.15207389251299078No Hit
TCACCCATGTAACGGG1477730.14822319683351046No Hit
ATTTCGACTCACCTAA1459710.14641570696260045No Hit
AGTGTTCGACGAGGAT1447060.14514685308540778No Hit
CGTGTACCTATCATGC1432190.1436553228756169No Hit
CGAAACGGAACTAGGG1426960.14313072953350484No Hit
TTGCATTACTTCCATT1420740.14250683458361246No Hit
GCTAAGACTAAGTTAG1398410.140267031652568No Hit
CGCACACGAATCAGGG1345060.13491577834440768No Hit
CCGTTTGTGCAAGTTC1343160.134725199501193No Hit
CGTGAATACGAGAGGG1331430.13354862590597796No Hit
TCCGTGTTGGAATAGT1331110.13351652841659445No Hit
TAACCAGACATCCTCC1302370.13063377265133616No Hit
TAGCTTTACAGCAGGT1289800.1293729431464894No Hit
TTCTAGACTTTGGCGC1286420.12903391341487586No Hit
GGTATTTCTGAATAAC1286150.12900683115820852No Hit
TTGCGATGACGAATCT1277760.1281652751084341No Hit
TTGGCGCGAATCATGC1273510.1277389803275591No Hit
CCGTCTATGGCCAGCT1261290.12651325745172556No Hit
TCCTTAATGCGTTCTC1259440.12632769384122702No Hit
CGTGCAGACTAACGAA1254130.12579507612676907No Hit
TCGACTAGACGAATCT1216460.12201659979840168No Hit
CATATCACTCGCACTG1187610.11912281052116784No Hit
TTCTAGTACAGTGAGC1178510.11821003816682371No Hit
TGGTCAAACAGTAGGC1148570.11520691681637721No Hit
CTCGGATCTTGGTCCG1143990.11474752149957546No Hit
TTGTCAACTTAGCTTG1143440.1146923539396975No Hit
ACAGTCATGTAAGTAG1137350.11408149859486721No Hit
TCGATGATGGCAGTTT1126630.11300623270051896No Hit
GGTATTGACGTTAGGG1120950.1124365022639613No Hit
TCAATGGACGAACATA1120200.11236127377321865No Hit
CTGCTGGGACAAGTTC1117500.11209045120654512No Hit
ACCGGCTGATGCTCAA1114800.1118196286398716No Hit
ACCCTTGTGAGTGGTG1113950.1117343696836966No Hit
ACTTCCTCTGACATAA1113010.11164008330863248No Hit
AGGCCAAGACTCTGGG1111650.11150366897875247No Hit
GTTAGTTCTCTCGATA1108470.11118470017800364No Hit
CTGCCTTGACCTATCC1096440.10997803518649157No Hit
ATAGGCGGACGTAGAG1091490.1094815271475901No Hit
ACCTATGGAGACAAAT1089160.10924781730301628No Hit
GTTAAGAGATGGGCAA1085810.10891179671103245No Hit
GATAACCTGTGAGCAG1076030.10793081719174832No Hit
CCGCTAACTCTCATTT1068860.10721163282024862No Hit
CTGACGTCTATGGCCC1067310.10705616060604714No Hit
CTTGCGTTGAGACAAT1066120.10693679806740215No Hit
TACGTGAACCTCCTAC1064410.10676527710850892No Hit
GCTGAATTGTGCACCG1058640.10618651925306213No Hit
GCTTTGCACAGCTGAG1040850.10440209945264652No Hit
CGACCTTTGGCTTCGG1039310.10424763028498829No Hit
GGGTATGGACGGCTCA1038430.10415936218918359No Hit
TGTACTGGACGTGCAC1033960.1037110003843574No Hit
CCTATCGACCAATGAA1026240.10293664845297974No Hit
TACCTGCTGATCCGTA1023100.10262169183840386No Hit
TAAGCCAACAATCCGT1023070.10261868269877417No Hit
TCCGAGTCTATCAGCT1023040.10261567355914446No Hit
CTGCGACGAGTACACT1021330.10244415260025122No Hit
AGTTTCACTGCTCTTC1020910.10240202464543532No Hit
TCAGCCGGACGATGTT1020620.10237293629568152No Hit
GGGTATGGACTCGATA1017790.10208907412394591No Hit
CTGGTGGACGCGCACT1016900.10199980298159798No Hit
TAGACCTGAGGCCAAA1016590.10196870853875768No Hit
GCCATTCACCCTGAGC1013770.10168584941356532No Hit
ACGCAGAGAGAACGTG1012250.10153338633899357No Hit
ATGATGCACCCAGAGA1009730.10128061861009827No Hit
TAGCAGACTGAACCTT1008150.10112213725626709No Hit
AGTTTCACTGGATGGT1005330.10083927813107474No Hit
GCATATCGACGTAGAG1003970.10070286380119474No Hit
CACATCCTGGCCACGT1003210.10062663226390885No Hit
ATCAAAGGATGCAAGG1001590.10046413872390474No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)