FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206002

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206002
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55401900
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG5864371.0585142386813449No Hit
CAGGCTTCTGGATGGT1247820.22523054263481937No Hit
TACCACCACTCGAGAG1243070.22437317131722917No Hit
CCGTTACTGTAGGCGA1036410.18707120152918943No Hit
GAGGGATACGACCGAA1008340.1820045882902933No Hit
TCGCGGTGATGCTACA936490.16903571899158693No Hit
CATTGGAACCGCAACC864250.1559964549952258No Hit
ACTGGAGGAATTCGGT861870.15556686684030693No Hit
TGTAAGCTGAGACTTC854430.15422395260812355No Hit
AAGACAAACACCGTTA847710.15301099781776437No Hit
GGTACCTCTCGATTGT821110.1482097184392593No Hit
ATTCCAACTTTTGTCT816970.14746245164877017No Hit
CGATACAACTAGACAA807890.14582351868798724No Hit
ATTTCGACTCACCTAA793030.1431413002081156No Hit
TCACCCATGTAACGGG786480.1419590302859649No Hit
AGTGTTCGACGAGGAT778460.14051142650342316No Hit
TTGCATTACTTCCATT769010.13880570882948057No Hit
CGTGTACCTATCATGC767930.1386107696667443No Hit
CGAAACGGAACTAGGG766020.13826601614746065No Hit
GCTAAGACTAAGTTAG749010.135195724334364No Hit
CCGTTTGTGCAAGTTC722540.13041790985507717No Hit
CGCACACGAATCAGGG719860.12993417193273155No Hit
TCCGTGTTGGAATAGT714520.1289703060725354No Hit
TAACCAGACATCCTCC712690.12863999249123223No Hit
CGTGAATACGAGAGGG703130.12691441990256652No Hit
TTGCGATGACGAATCT699620.12628086762367355No Hit
TAGCTTTACAGCAGGT694750.12540183639911268No Hit
TTGGCGCGAATCATGC693900.12524841205807022No Hit
TCCTTAATGCGTTCTC686910.12398672247702697No Hit
GGTATTTCTGAATAAC686880.12398130750028429No Hit
TTCTAGACTTTGGCGC684860.12361669906627751No Hit
CGTGCAGACTAACGAA682450.12318169593461595No Hit
CCGTCTATGGCCAGCT676110.122037330849664No Hit
TCGACTAGACGAATCT666350.1202756584160471No Hit
CATATCACTCGCACTG642770.11601948669630463No Hit
TTCTAGTACAGTGAGC638580.11526319494457771No Hit
CTCGGATCTTGGTCCG622210.11230842263532478No Hit
TGGTCAAACAGTAGGC621570.11219290313148106No Hit
TCAATGGACGAACATA613120.11066768468229429No Hit
TCGATGATGGCAGTTT612280.11051606533349939No Hit
ACCGGCTGATGCTCAA607430.10964064409343362No Hit
CTGCCTTGACCTATCC607050.1095720543880264No Hit
TTGTCAACTTAGCTTG606450.1094637548531729No Hit
CTGCTGGGACAAGTTC602450.10874175795414957No Hit
ACTTCCTCTGACATAA599270.10816777041942605No Hit
ACAGTCATGTAAGTAG597780.10789882657453986No Hit
ACCCTTGTGAGTGGTG597210.10779594201642903No Hit
GTTAGTTCTCTCGATA593910.10720029457473479No Hit
ACCTATGGAGACAAAT590600.10660284214079302No Hit
GTTAAGAGATGGGCAA587830.10610285928821936No Hit
ATAGGCGGACGTAGAG585330.10565161122632978No Hit
CTTGCGTTGAGACAAT585310.10564800124183465No Hit
AGGCCAAGACTCTGGG585170.10562273135036886No Hit
GGTATTGACGTTAGGG584240.10545486707134594No Hit
TACGTGAACCTCCTAC582890.10521119311792555No Hit
CCGCTAACTCTCATTT580080.10470399029636167No Hit
CTGACGTCTATGGCCC579610.10461915566072644No Hit
GATAACCTGTGAGCAG577400.10422025237401605No Hit
CGACCTTTGGCTTCGG564370.1018683474754476No Hit
GCTGAATTGTGCACCG563470.10170589817316736No Hit
CTGCGACGAGTACACT562780.10158135370808583No Hit
TCAGCCGGACGATGTT560970.10125465011127778No Hit
TCCGAGTCTATCAGCT560600.10118786539811812No Hit
AGTTTCACTGCTCTTC559580.10100375618886717No Hit
CCTATCGACCAATGAA559540.10099653621987693No Hit
TAAGCCAACAATCCGT557190.10057236304170072No Hit
CTGGTGGACGCGCACT557090.10055431311922515No Hit
TACCTGCTGATCCGTA556970.10053265321225445No Hit
TAGCAGACTGAACCTT556730.10048933339831306No Hit
CTGAGATACCCAAACT554160.10002545039069057No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)