FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206006

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206006
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55837338
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG5999671.0744906929481488No Hit
TACCACCACTCGAGAG1275570.2284439132825422No Hit
CAGGCTTCTGGATGGT1257100.22513609083584896No Hit
CCGTTACTGTAGGCGA1052770.18854229762887337No Hit
GAGGGATACGACCGAA1021060.18286330197188125No Hit
TCGCGGTGATGCTACA950890.17029644214056194No Hit
CATTGGAACCGCAACC874890.15668547809352945No Hit
ACTGGAGGAATTCGGT873300.15640072239833497No Hit
TGTAAGCTGAGACTTC861510.15428923205472295No Hit
AAGACAAACACCGTTA858230.1537018115011142No Hit
GGTACCTCTCGATTGT840810.15058203526822858No Hit
ATTCCAACTTTTGTCT826410.14800311576458033No Hit
CGATACAACTAGACAA825110.14777029664272318No Hit
ATTTCGACTCACCTAA806060.14435860104935516No Hit
TCACCCATGTAACGGG793110.14203936441239373No Hit
AGTGTTCGACGAGGAT783130.14025202992305974No Hit
TTGCATTACTTCCATT777070.1391667346319411No Hit
CGAAACGGAACTAGGG775680.13891779726318615No Hit
CGTGTACCTATCATGC772390.13832858579325538No Hit
GCTAAGACTAAGTTAG762830.13661646978944447No Hit
CCGTTTGTGCAAGTTC729720.13068674584737547No Hit
TCCGTGTTGGAATAGT728560.13047899955402603No Hit
CGCACACGAATCAGGG723950.12965338712959418No Hit
TAACCAGACATCCTCC717770.1285466008426118No Hit
CGTGAATACGAGAGGG715560.12815080833545467No Hit
TTGCGATGACGAATCT707760.12675389360431186No Hit
TAGCTTTACAGCAGGT705520.1263527283481888No Hit
TCCTTAATGCGTTCTC693610.12421974700871306No Hit
GGTATTTCTGAATAAC691440.12383111816684385No Hit
TTGGCGCGAATCATGC690890.12373261776913505No Hit
TTCTAGACTTTGGCGC690370.1236394901203922No Hit
CCGTCTATGGCCAGCT686500.12294640550378673No Hit
CGTGCAGACTAACGAA681250.12200617443474832No Hit
TCGACTAGACGAATCT672270.1203979315776121No Hit
CATATCACTCGCACTG659220.11806078577743086No Hit
TTCTAGTACAGTGAGC641530.11489265480385186No Hit
TGGTCAAACAGTAGGC632100.11320382071222665No Hit
CTCGGATCTTGGTCCG628420.11254476350573876No Hit
TCAATGGACGAACATA625400.1120039067765014No Hit
TCGATGATGGCAGTTT624180.11178541498522011No Hit
ACCGGCTGATGCTCAA617980.11067504686559378No Hit
CTGCTGGGACAAGTTC612660.1097222793823015No Hit
ACTTCCTCTGACATAA611100.10944289643607294No Hit
TTGTCAACTTAGCTTG607030.1087139934930279No Hit
CTGCCTTGACCTATCC606690.10865310233808066No Hit
ACAGTCATGTAAGTAG604200.10820716417390816No Hit
ACCCTTGTGAGTGGTG603000.1079922542152708No Hit
GGTATTGACGTTAGGG598750.10723111477843016No Hit
AGGCCAAGACTCTGGG598500.1071863418703807No Hit
ATAGGCGGACGTAGAG597520.10701083207082687No Hit
GTTAGTTCTCTCGATA597120.10693919541794775No Hit
ACCTATGGAGACAAAT595440.10663832147585546No Hit
GTTAAGAGATGGGCAA592320.10607955558339835No Hit
CCGCTAACTCTCATTT591870.10599896434890933No Hit
GATAACCTGTGAGCAG588130.10532916164448956No Hit
CTGACGTCTATGGCCC587950.10529692515069396No Hit
TACGTGAACCTCCTAC587870.10528259782011813No Hit
CTTGCGTTGAGACAAT586920.10511246076953024No Hit
CGACCTTTGGCTTCGG573910.10278247863463692No Hit
GCTGAATTGTGCACCG572320.10249772293944243No Hit
TAGCAGACTGAACCTT572300.10249414110679847No Hit
TCCGAGTCTATCAGCT571610.10237056788058199No Hit
CTGCGACGAGTACACT566950.10153600087454025No Hit
CCTATCGACCAATGAA565280.10123691784876994No Hit
GCTTTGCACAGCTGAG563350.10089127099862819No Hit
GGGTATGGACGGCTCA562910.10081247068046116No Hit
CTGGTGGACGCGCACT562740.10078202510298755No Hit
TACCTGCTGATCCGTA562000.10064949729516118No Hit
AGTTTCACTGCTCTTC561650.10058681522389194No Hit
TAAGCCAACAATCCGT559890.10027161395122382No Hit
CTGAGATACCCAAACT559220.1001516225576513No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)