FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206016

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206016
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39914699
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGCCCAT1086914627.230935651049254No Hit
TGCGAATG980663024.568968940489817No Hit
CTTAGTCA941646823.59147941964939No Hit
ACATTGGC917994322.998903236123613No Hit
TGCGAATA759920.19038600291085747No Hit
CTTAGTAA554460.13891123167432629No Hit
TGCGACTG494630.12392176626460344No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)