FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206024

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206024
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96849494
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTGACT2490346225.713569551535294No Hit
TCAGTCAA2443013725.22484732857768No Hit
ATGCATTC2371674124.48824461591921No Hit
GGTACGGG2219502222.917024223172504No Hit
GGTACGGA2501330.2582698057255725No Hit
ATGCATTA1906600.1968621539726372No Hit
TTAGTCAA1472560.15204622545575716No Hit
CACTGACA1377990.14228159003081628No Hit
TCAGTAAA1001380.10339548082718947No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)