FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206028

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206028
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96404946
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTGACT2478081725.704922857381195No Hit
TCAGTCAA2433287025.240271386075978No Hit
ATGCATTC2358888824.46854542089573No Hit
GGTACGGG2206672422.88961813224811No Hit
GGTACGGA2496950.259006420687171No Hit
ATGCATTA1904840.1975873727474522No Hit
TTAGTCAA1458340.15127232165038504No Hit
CACTGACA1371490.1422634477695781No Hit
TCAGTAAA1018960.10569582187204378No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)