FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206032

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206032
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45063544
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTGACT1151267825.547653331482316No Hit
TCAGTCAA1121652224.890456906806975No Hit
ATGCATTC1112469924.686693527699465No Hit
GGTACGGG1031253822.884436252949836No Hit
ATGCATTA1481350.32872470039196205No Hit
GGTACGGA1172090.26009716412894646No Hit
CACTGACA640010.142023894081655No Hit
GGTCCGGG619160.13739709420102422No Hit
TCAGTAAA567080.12584008039847022No Hit
TTAGTCAA547470.12148844751313834No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)