FastQCFastQC Report
Tue 28 Jun 2022
EGAF00006206040

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206040
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107615607
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAAGCCT3138296529.16209449062532No Hit
CGCTCAGG2583717224.008759249947826No Hit
ACTCAGAC2478005723.02645284526435No Hit
GAGGTTTA2371787422.039437086481332No Hit
GAGGTTAA2961990.2752379587470059No Hit
CGCTCAGA2146000.19941345496476176No Hit
TTAAGCCA1708170.15872883567901075No Hit
ACTCAGAA1545140.14357954604112394No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)