FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206044

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206044
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106808905
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAAGCCT3113200529.1473871022271No Hit
CGCTCAGG2561222623.97948560562436No Hit
ACTCAGAC2456284922.99700479093948No Hit
GAGGTTTA2356369222.061542527750845No Hit
GAGGTTAA2952160.2763964296797163No Hit
CGCTCAGA2125800.19902834880668424No Hit
TTAAGCCA1709680.16006905042234074No Hit
ACTCAGAA1536400.14384568402793757No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)