FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206048

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206048
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52550676
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAAGCCT1525412629.027459132971No Hit
CGCTCAGG1268990324.14793484293142No Hit
ACTCAGAC1206068822.950585830713198No Hit
GAGGTTTA1155901421.995937787746062No Hit
GAGGTTAA1450770.2760706636770952No Hit
CGCTCAGA1052160.2002181665560306No Hit
ACTCAGAA841590.16014827287854488No Hit
TTAAGCCA812300.1545746052819568No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)