FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206052

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206052
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52799842
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAAGCCT1532195829.018946685484398No Hit
CGCTCAGG1275530424.157845017793804No Hit
ACTCAGAC1214690423.005568842421916No Hit
GAGGTTTA1161084621.99030444068374No Hit
GAGGTTAA1451020.2748152163031094No Hit
CGCTCAGA1060230.20080173724762282No Hit
ACTCAGAA827900.15679971163550072No Hit
TTAAGCCA823580.15598152736896448No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)