FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206056

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206056
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences111171649
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGGAAT2978619726.792979386318176No Hit
ACACCGGG2747640024.715294094450286No Hit
TTGTTCTA2703834724.321261079792027No Hit
CATAATCC2470160922.21934209143556No Hit
ACACCGGA3521470.3167597163194008No Hit
CATAATCA3096270.2785125549410533No Hit
GGCGGACT2021600.18184492343007344No Hit
TTGTTCAA1450560.13047930952252043No Hit
GTGTTCTA1411120.12693164243700297No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)