FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206064

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206064
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27444104
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGGAAT744630127.132607426352852No Hit
ACACCGGG672872524.517925598882734No Hit
TTGTTCTA657700523.965092830139398No Hit
CATAATCC599673121.850707897040472No Hit
GGCGGACT1002990.36546647687969697No Hit
ACACCGGA861370.3138634076011372No Hit
GTGTTCTA814630.29683242710346824No Hit
CATAATCA801150.29192062528257434No Hit
TTGTTCAA349620.12739348313211465No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)