FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206068

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206068
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27609676
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGGAAT748926227.125497597291613No Hit
ACACCGGG678738524.583356211786043No Hit
TTGTTCTA662136223.98203441431185No Hit
CATAATCC604160721.882208976302365No Hit
GGCGGACT902490.3268745348550994No Hit
ACACCGGA871850.31577697615864814No Hit
CATAATCA788300.2855158459664648No Hit
GTGTTCTA780320.2826255548960444No Hit
TTGTTCAA354460.12838252792245733No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)