FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206072

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206072
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences95744179
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTTT2802426929.269945486712047No Hit
TTTATCCC2579820026.944927900003197No Hit
CAGGAAGA2348535824.529280260474113No Hit
AGCTCGAG1653840117.273531584619885No Hit
GCACGTTA4356830.45504907405389106No Hit
TTTATCCA3048860.31843815800018505No Hit
CAGGAAAA1074790.11225643284277366No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)