FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206080

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206080
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81184695
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTCCT2282229428.111572014897636No Hit
ATCTGATC2132337626.26526588539872Illumina PCR Primer Index 9 (100% over 8bp)
GAGAAGGG1824072422.468180732833943No Hit
CGTGCTAA1741991321.457139181221287No Hit
GAGAAGGA1751670.21576357464913798No Hit
ATCTGATA1627180.20042940359633055No Hit
TCACTCCA1613200.19870740414803553No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)