FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206084

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206084
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81022873
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTCCT2273962428.065684612294607No Hit
ATCTGATC2130339326.293060479353773Illumina PCR Primer Index 9 (100% over 8bp)
GAGAAGGG1816933122.42494042392202No Hit
CGTGCTAA1737978321.45046498166018No Hit
GAGAAGGA1743600.21519849092490215No Hit
ATCTGATA1636970.2020380096864746No Hit
TCACTCCA1615920.19943997789364987No Hit
CTCTGATC916310.11309275591844294No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)