FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206086

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206086
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81022873
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG7247860.8945449268381287No Hit
AGGGCGTCTTGCATCA3873030.4780168681503062No Hit
TTCCAAACTACCAGTT2376610.293325811835875No Hit
CTTCCTTTGTACAGCT2113790.2608880581166259No Hit
CCTATCGACGAGTGAC2002350.24713391735689252No Hit
TGGCATCCTCTATCTT1978740.24421992540304022No Hit
GCCTCTTGAAGGCGTA1881840.23226033962039339No Hit
GGCTTACCTTACGTTG1853190.2287243010995179No Hit
TCGCTGGGACGTGCAC1851400.2285033758306744No Hit
CAAACCTGATTGACCA1788650.22075864922736077No Hit
CTTACATTGAAAGCTA1723760.21274979967693813No Hit
CGCTAGTCTCCTAACA1710120.21106632444396287No Hit
CGTAGCGACAAGTTAG1698270.20960377447983114No Hit
TCCGACACTTGTCACA1560820.19263942911528206No Hit
CCGCTATTGCGGAATG1539040.1899512993077893No Hit
CGACAATACCTTCACC1493170.18428993501625152No Hit
ATGATGCACGCATGAG1484230.1831865428914129No Hit
CCAAGTTGAGCGTATT1477260.18232629198424005No Hit
CTTCAGCACCAATAGA1466830.18103900117192834No Hit
AACAGCTACGAAGGTC1414730.17460871820726476No Hit
CCTTCTACTGCCACGT1387470.17124423618007226No Hit
CCTGAGGACTGTCACA1370130.16910409977686178No Hit
GGGTTCTCTTCATTTC1327370.16382657771219739No Hit
AAATGCCTGAATCTGC1321270.1630737038909988No Hit
TAAGTGCACCAGACCC1314000.16217642640245553No Hit
GGAATGGTGTGAAAGT1301310.1606102020104866No Hit
ACTAACCGATTCTCGC1285640.15867618024357147No Hit
TCCCACATGAAATCGA1283520.15841452573522047No Hit
AAGATCAGAAAGACAT1267620.156452116922588No Hit
TACCACCACGCTAGAG1255400.15494390084143278No Hit
AGTCCTGCTCTCACGG1240450.15309874286980665No Hit
CAGATGACTCGACTAT1237570.1527432876886506No Hit
GGCGTTTCTGTTGACT1233170.1522002311618844No Hit
TGTTACTACGCGCACT1232230.15208421454025706No Hit
GTTGATGACCGAGTTT1215770.1500526894423998No Hit
TCCGAATGATGCACCG1203040.14848152817291482No Hit
CAATGCCCTCTTGTGA1179690.14559962592291684No Hit
TTACCATTGGTGGTGA1175470.1450787853449729No Hit
AACGTAGCTAAGTTCC1173660.14485539163737135No Hit
TTCAAGCGATTGGGAG1163270.14357303770257565No Hit
TACTGTTTGTGCTCAA1160630.14324720378651593No Hit
CAATGCCCTATCCTCC1129960.13946185295107963No Hit
CCATTGCTGACACAAA1129310.13938162869144372No Hit
CAGGCCATGACGCGAA1113960.13748710194465705No Hit
CGACGACACAACCAAA1095070.13515566153769937No Hit
CCCTATCGATCTATCT1095010.1351482562214253No Hit
CGTAATCGAGACTCGC1078800.13314758660804338No Hit
ACGATAGCTATCATGC1077630.13300318294069874No Hit
GGTTCACCTTGCGGCT1075780.13277485235558112No Hit
AACCAACACACCTTGA1071630.13226265131329026No Hit
GTTTCAGGAGTTCTCC1071370.1322305616094359No Hit
ACGTTCAGACCATAAC1053990.13008548832870936No Hit
AGCCGGTACTTGTTTC1053570.13003365111479076No Hit
TTCCAAACTATTGCCA1050500.12965474576543343No Hit
ATCCTCGACATTCTGG1026430.12668397972014644No Hit
TACTAACCTGAATTGA1011260.12481166892218201No Hit
GCTTTGCACTCCCAGG1007270.12431921538995538No Hit
TGTTACTACGCTGAGA1007270.12431921538995538No Hit
ATTCAGGTGGCTTACA1001570.12361571034391733No Hit
CTTCCTTTGATAGGTA997570.1231220225923117No Hit
TCCGTAAGAGTCCCAG993850.12266289298331842No Hit
AAACATGGAGTTTGGT980450.1210090390154395No Hit
CGATATTCTCGACATT980120.12096830977593204No Hit
CCTGCCTCTTGAACAA972210.11999204224713188No Hit
GTTCGCTTGTCTGGAT971680.11992662862004412No Hit
ATCGCAAACTGCGTGC961550.11867636438910281No Hit
AGTGGTACTTGACTCA959990.11848382616597661No Hit
CAAGAATGAGCCCTAG959980.1184825919465976No Hit
CAGCGCATGTGCGGCT956550.11805925469959574No Hit
GTCGACCGAACCATGT956320.11803086765387844No Hit
AACGTCCCTTCTTTGT953300.11765813340141618No Hit
TCGCCTATGTCATGTG952140.11751496395345053No Hit
GTAACTCGATAAGTAG952090.11750879285655545No Hit
ACCCTTTCTTAGGAGC945430.11668680275013206No Hit
ACCCGAGACTCGAGAG943870.11649426452700586No Hit
TGTTTGTTGAGGACCA941090.11615115153963992No Hit
GGGATTGGACGCTCGA935500.11546122290677102No Hit
CCGTTCTGATAACGAA934580.11534767472390173No Hit
TATCCATACACCCGGT934190.11529954016812018No Hit
TAACGCATGTGATGAA932110.11504282253728523No Hit
TTCTTAGACCGAAAGC931460.11496259827764932No Hit
TGACTCAGATACGATC919600.11349881409413858No Hit
TTCAGTTACGGTGCAA916320.11309399013782195No Hit
AACAGCTACATGTCAC914400.11285702001705122No Hit
GTCAAGTACACCTGCG912150.11257932065677305No Hit
CCCAATGCTAGGTGAC908900.11217819935859348No Hit
TGGGTTTGATCTGGAT899960.11107480723375485No Hit
TAGCGCGACGGACTGA898720.11092176403075708No Hit
TTCGAGAACTCGACAT889680.10980602971212831No Hit
CTTTCCGGACTATCTT886580.10942342170463396No Hit
GCTAGCGACGCTGTTA879930.10860266581758957No Hit
GTAGATAGAACCATGT871320.1075400029322584No Hit
ATCGTTTACATCCTCC868300.10716726867979615No Hit
CAATCGCCTATCACAC868120.10714505273097388No Hit
AGATATGGATCGTCCT866360.10692783012026741No Hit
CTTAGAGACCCTCAAA866240.10691301948771922No Hit
AAGCCTAACTCTATCT865270.10679330020795487No Hit
AAGAAACACCCTAGGC857190.10579605094971145No Hit
CAAACCTGATCGCTAA853410.10532951602444411No Hit
TCGACGGACTCGTAAC849650.1048654495379348No Hit
GCTACTGCTTTTCTGT846020.10441742790335266No Hit
GGCTCAGACCGATTAC844250.10419897107326719No Hit
TCTACGAGAGTTCTCC842860.10402741457958421No Hit
TGCTGCTACGGAATTA841520.10386202918279631No Hit
GGAAGAAGAAAAGGTT838710.10351521353729334No Hit
CTATAGCGAGCGTATT838110.1034411603745525No Hit
CGTTGCACTTGGTGAG837920.10341771020635124No Hit
CAGTCCGGATCTGTGA829720.10240565031555966No Hit
AGGCCAAGATGTGCTA824520.10176385623847231No Hit
AGCTGATACCTCATTT822490.10151330970453246No Hit
CCTACTGTGAGGACCA821980.10145036451620272No Hit
TCAGACCCTTTGTTTC812180.1002408295247689No Hit
GTCTGGCGAGATGGAC811990.10021737935656762No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)