FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206088

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206088
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20480745
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTCCT572170427.936991549867933No Hit
ATCTGATC534764226.11058337965733Illumina PCR Primer Index 9 (100% over 8bp)
GAGAAGGG457250422.32586754046301No Hit
CGTGCTAA438610321.415739515335012No Hit
ATCTGATA470450.22970355814693263No Hit
CTCTGATC463040.22608552569742946No Hit
GAGAAGGA438770.21423537083245753No Hit
TCACTCCA413300.2017992997813312No Hit
CATGCTAA354190.17293804497834428No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)