FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206090

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206090
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20480745
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG1815590.8864863070166638No Hit
AGGGCGTCTTGCATCA965710.4715209334426067No Hit
TTCCAAACTACCAGTT583740.28501892875478896No Hit
CTTCCTTTGTACAGCT512970.2504645216763355No Hit
CCTATCGACGAGTGAC500570.2444100544194071No Hit
TGGCATCCTCTATCTT483960.2362999978760538No Hit
GCCTCTTGAAGGCGTA449680.2195623254915776No Hit
TCGCTGGGACGTGCAC448570.2190203530193848No Hit
GGCTTACCTTACGTTG439940.214806639113958No Hit
CAAACCTGATTGACCA437020.21338090972764906No Hit
CTTACATTGAAAGCTA421610.20585676937045014No Hit
CGCTAGTCTCCTAACA419990.2050657825191418No Hit
CGTAGCGACAAGTTAG410250.2003100961415222No Hit
TCCGACACTTGTCACA379130.18511533638058578No Hit
CCGCTATTGCGGAATG370370.18083814822165895No Hit
CCAAGTTGAGCGTATT363590.1775277217698868No Hit
CGACAATACCTTCACC361730.17661955168134755No Hit
CTTCAGCACCAATAGA360290.1759164522579623No Hit
ATGATGCACGCATGAG356260.17394875039946056No Hit
CCTTCTACTGCCACGT345040.1684704340589173No Hit
CCTGAGGACTGTCACA340310.1661609477584922No Hit
AACAGCTACGAAGGTC339680.16585334176076114No Hit
AAATGCCTGAATCTGC324680.15852938943383163No Hit
TAAGTGCACCAGACCC321520.15698647681029182No Hit
TCCCACATGAAATCGA320580.15652750913113755No Hit
ACTAACCGATTCTCGC317900.15521896298205948No Hit
GGGTTCTCTTCATTTC314830.15371999407248124No Hit
AAGATCAGAAAGACAT313460.15305107309328836No Hit
GGAATGGTGTGAAAGT311610.15214778563963371No Hit
TGTTACTACGCGCACT308740.15074646942774786No Hit
TACCACCACGCTAGAG307190.1499896610206318No Hit
CAGATGACTCGACTAT304350.14860299271339983No Hit
AGTCCTGCTCTCACGG302690.14779247532255296No Hit
GTTGATGACCGAGTTT298770.14587848244778207No Hit
GGCGTTTCTGTTGACT295850.14445275306147312No Hit
TCCGAATGATGCACCG294430.14375941890785712No Hit
TTACCATTGGTGGTGA289100.14115697451435483No Hit
CAATGCCCTCTTGTGA286000.13964335770012273No Hit
TTCAAGCGATTGGGAG285120.13921368583027618No Hit
AACGTAGCTAAGTTCC284400.13886213611858358No Hit
TACTGTTTGTGCTCAA283680.13851058640689096No Hit
CCATTGCTGACACAAA282150.13776354326954415No Hit
CAATGCCCTATCCTCC280330.13687490372054337No Hit
CCCTATCGATCTATCT279740.1365868282623508No Hit
CAGGCCATGACGCGAA271980.13279790359188595No Hit
CGACGACACAACCAAA268730.13121104725438454No Hit
CGTAATCGAGACTCGC267950.13083020173338422No Hit
TTCCAAACTATTGCCA263570.1286916076539208No Hit
GTTTCAGGAGTTCTCC261730.12779320283515078No Hit
ACGATAGCTATCATGC261540.127700432772343No Hit
GGTTCACCTTGCGGCT261070.12747094893276587No Hit
ATCCTCGACATTCTGG258940.12643094770234187No Hit
AACCAACACACCTTGA258560.12624540757672634No Hit
ACGTTCAGACCATAAC255440.124722025492725No Hit
AGCCGGTACTTGTTTC252780.12342324461341615No Hit
TGTTACTACGCTGAGA249200.12167526132472231No Hit
CGATATTCTCGACATT248360.12126511999441428No Hit
CTTCCTTTGATAGGTA247400.12079638704549078No Hit
TACTAACCTGAATTGA245570.11990286486160538No Hit
CCTGCCTCTTGAACAA244060.11916558699402781No Hit
GCTTTGCACTCCCAGG242970.11863337979160427No Hit
TCCGTAAGAGTCCCAG242820.11856014026833496No Hit
ATTCAGGTGGCTTACA240410.11738342526114162No Hit
GTAACTCGATAAGTAG237430.11592840006552495No Hit
AAACATGGAGTTTGGT237310.11586980844690953No Hit
CAAGAATGAGCCCTAG237240.11583563000271718No Hit
TCGCCTATGTCATGTG236510.11547919765613995No Hit
ATCGCAAACTGCGTGC236290.11537177968867832No Hit
AGTGGTACTTGACTCA235880.1151715916584089No Hit
GTCGACCGAACCATGT234340.11441966588617747No Hit
AACGTCCCTTCTTTGT233920.11421459522102345No Hit
CAGCGCATGTGCGGCT232650.11359450059067674No Hit
ACCCGAGACTCGAGAG232650.11359450059067674No Hit
GTTCGCTTGTCTGGAT232580.11356032214648441No Hit
TTCTTAGACCGAAAGC229780.11219318437879092No Hit
CCGTTCTGATAACGAA228470.11155355920890572No Hit
ACCCTTTCTTAGGAGC228120.11138266698794404No Hit
TATCCATACACCCGGT228110.11137778435305942No Hit
TGTTTGTTGAGGACCA227740.1111971268623285No Hit
TAACGCATGTGATGAA227550.11110435679952071No Hit
CCCAATGCTAGGTGAC226510.11059656277152027No Hit
TTCAGTTACGGTGCAA224600.10966397950855791No Hit
AACAGCTACATGTCAC222950.10885834475259568No Hit
TGACTCAGATACGATC222610.10869233516651859No Hit
GTCAAGTACACCTGCG222010.10839937707344141No Hit
GGGATTGGACGCTCGA221640.10821871958271048No Hit
TAGCGCGACGGACTGA219680.10726172314532503No Hit
TTCGAGAACTCGACAT218990.10692482133828629No Hit
CTTTCCGGACTATCTT218800.1068320512754785No Hit
AGATATGGATCGTCCT216510.1057139278869006No Hit
CAATCGCCTATCACAC216300.10561139255432359No Hit
TGGGTTTGATCTGGAT215890.10541120452405418No Hit
AAGCCTAACTCTATCT213850.10441514700759177No Hit
CTTAGAGACCCTCAAA213300.10414660208893768No Hit
ATCGTTTACATCCTCC212100.10356068590278332No Hit
GCTAGCGACGCTGTTA211900.10346303320509093No Hit
CAAACCTGATCGCTAA211780.10340444158647549No Hit
TCTACGAGAGTTCTCC211370.10320425355620608No Hit
GTAGATAGAACCATGT210610.102833173304975No Hit
AAGAAACACCCTAGGC210150.10260857210028249No Hit
TCGACGGACTCGTAAC210090.10257927629097477No Hit
CTATAGCGAGCGTATT207220.10117796007908893No Hit
TGCTGCTACGGAATTA206360.10075805347901164No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)