FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206092

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206092
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20637768
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTCCT577089627.96279132510841No Hit
ATCTGATC540453226.187579974733705Illumina PCR Primer Index 9 (100% over 8bp)
GAGAAGGG460831822.32953679874684No Hit
CGTGCTAA441782621.406510626536747No Hit
ATCTGATA460000.22289232052613442No Hit
GAGAAGGA442100.2142189019665305No Hit
TCACTCCA418900.20297737623564716No Hit
CTCTGATC401110.19435725801356038No Hit
CATGCTAA357910.17342476182501906No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)