FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206094

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206094
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20637768
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG1845240.8941083163644441No Hit
AGGGCGTCTTGCATCA969100.46957597352581926No Hit
TTCCAAACTACCAGTT594520.28807378782434223No Hit
CTTCCTTTGTACAGCT517970.2509815983976562No Hit
CCTATCGACGAGTGAC506040.24520093451966318No Hit
TGGCATCCTCTATCTT489220.23705082836477276No Hit
GCCTCTTGAAGGCGTA460920.2233381051671867No Hit
TCGCTGGGACGTGCAC456550.2212206281221884No Hit
GGCTTACCTTACGTTG451250.218652520950909No Hit
CAAACCTGATTGACCA449180.21764950550854142No Hit
CGCTAGTCTCCTAACA424550.20571507538993558No Hit
CGTAGCGACAAGTTAG424110.2055018740398671No Hit
CTTACATTGAAAGCTA423740.2053225910864004No Hit
TCCGACACTTGTCACA382560.18536888291408257No Hit
CCGCTATTGCGGAATG378180.18324656038385545No Hit
CGACAATACCTTCACC370700.17962213743269137No Hit
CCAAGTTGAGCGTATT370140.17935079025987694No Hit
CTTCAGCACCAATAGA366050.17736898680128588No Hit
ATGATGCACGCATGAG363860.17630782553617233No Hit
CCTTCTACTGCCACGT354200.1716270868051235No Hit
AACAGCTACGAAGGTC343940.16665561896034492No Hit
CCTGAGGACTGTCACA341790.1656138396361467No Hit
TAAGTGCACCAGACCC328580.15921295364886356No Hit
TCCCACATGAAATCGA326560.15823416563264012No Hit
AAATGCCTGAATCTGC326330.15812271947237705No Hit
GGGTTCTCTTCATTTC322070.1560585427648959No Hit
GGAATGGTGTGAAAGT319010.1545758242848742No Hit
ACTAACCGATTCTCGC317590.1538877653823805No Hit
AAGATCAGAAAGACAT317040.1536212636947949No Hit
TACCACCACGCTAGAG311150.15076727289501463No Hit
CAGATGACTCGACTAT311060.15072366352795516No Hit
TGTTACTACGCGCACT309070.14975941196741818No Hit
AGTCCTGCTCTCACGG306650.14858680454204157No Hit
GTTGATGACCGAGTTT304720.14765162589287756No Hit
GGCGTTTCTGTTGACT303310.14696841247561268No Hit
CAATGCCCTCTTGTGA291870.14142517737383228No Hit
TCCGAATGATGCACCG291460.1412265124794503No Hit
AACGTAGCTAAGTTCC291380.14118774859761968No Hit
TACTGTTTGTGCTCAA289540.14029617931551513No Hit
TTACCATTGGTGGTGA288150.1396226568687079No Hit
CCATTGCTGACACAAA287700.1394046100334106No Hit
TTCAAGCGATTGGGAG287520.13931739129929166No Hit
CAATGCCCTATCCTCC279310.13533924792642305No Hit
CCCTATCGATCTATCT276610.13403096691463923No Hit
CGACGACACAACCAAA275590.13353672742129866No Hit
CAGGCCATGACGCGAA272540.1320588544265058No Hit
CGTAATCGAGACTCGC268700.13019818809863545No Hit
GTTTCAGGAGTTCTCC268360.13003344160085528No Hit
ACGATAGCTATCATGC268100.12990745898490572No Hit
AACCAACACACCTTGA266540.1291515632892084No Hit
GGTTCACCTTGCGGCT265210.12850711375377413No Hit
TTCCAAACTATTGCCA262680.1272812059908804No Hit
ATCCTCGACATTCTGG260310.12613282599164793No Hit
ACGTTCAGACCATAAC258760.12538177578117943No Hit
AGCCGGTACTTGTTTC255950.12402019443187849No Hit
TGTTACTACGCTGAGA249590.12093846582634324No Hit
CGATATTCTCGACATT248730.12052175409666395No Hit
TACTAACCTGAATTGA248220.12027463434999366No Hit
TCCGTAAGAGTCCCAG248180.12025525240907835No Hit
GCTTTGCACTCCCAGG247590.11996936878057743No Hit
CTTCCTTTGATAGGTA246700.11953812059521166No Hit
ATTCAGGTGGCTTACA245210.11881614329611613No Hit
CCTGCCTCTTGAACAA242700.11759992650368005No Hit
CAAGAATGAGCCCTAG241950.11723651511151788No Hit
AAACATGGAGTTTGGT241410.1169748589091611No Hit
AGTGGTACTTGACTCA239560.11607844414182773No Hit
GTCGACCGAACCATGT238860.11573926017580971No Hit
GTTCGCTTGTCTGGAT238370.11550183139959708No Hit
GTAACTCGATAAGTAG238100.1153710032984187No Hit
ACCCGAGACTCGAGAG237290.11497851899488355No Hit
AACGTCCCTTCTTTGT237250.11495913705396824No Hit
CAGCGCATGTGCGGCT237020.11484769089370518No Hit
ATCGCAAACTGCGTGC235170.11395127612637182No Hit
TCGCCTATGTCATGTG235030.11388343933316819No Hit
ACCCTTTCTTAGGAGC233900.11333589950231053No Hit
TATCCATACACCCGGT233070.1129337242283177No Hit
CCCAATGCTAGGTGAC230320.11160121579038974No Hit
CCGTTCTGATAACGAA230110.11149946060058431No Hit
TGTTTGTTGAGGACCA229390.11115058566410864No Hit
TTCTTAGACCGAAAGC229090.11100522110724378No Hit
GTCAAGTACACCTGCG228690.11081140169809062No Hit
TGACTCAGATACGATC228330.11063696422985275No Hit
TTCAGTTACGGTGCAA227460.11021540701494463No Hit
TAACGCATGTGATGAA227220.11009911536945276No Hit
AACAGCTACATGTCAC226540.10976962237389237No Hit
GGGATTGGACGCTCGA223310.1082045306449806No Hit
TAGCGCGACGGACTGA222250.10769090921072472No Hit
AGATATGGATCGTCCT222150.10764245435843645No Hit
CTTTCCGGACTATCTT221500.10732749781856256No Hit
TTCGAGAACTCGACAT220340.10676542153201839No Hit
CAATCGCCTATCACAC219370.10629540946482197No Hit
AAGCCTAACTCTATCT219050.10614035393749943No Hit
TGGGTTTGATCTGGAT218350.10580116997148141No Hit
CTTAGAGACCCTCAAA216920.10510826558375887No Hit
GCTAGCGACGCTGTTA215510.10442505216649398No Hit
GTAGATAGAACCATGT214750.10405679528910296No Hit
TCTACGAGAGTTCTCC213250.10332997250477863No Hit
CAAACCTGATCGCTAA212750.10308769824333716No Hit
CTATAGCGAGCGTATT212600.10301501596490473No Hit
ATCGTTTACATCCTCC210980.10223004735783443No Hit
AAGAAACACCCTAGGC210970.1022252018726056No Hit
TCGACGGACTCGTAAC208630.10109135832905962No Hit
AGGCCAAGATGTGCTA208220.10089269343467762No Hit
CGTTGCACTTGGTGAG208190.10087815697899115No Hit
GCTACTGCTTTTCTGT207280.1004372178231677No Hit
TGCTGCTACGGAATTA207190.10039360845610823No Hit
GGCTCAGACCGATTAC206710.10016102516512446No Hit
GGAAGAAGAAAAGGTT206590.10010287934237849No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)