FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206096

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206096
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences104252326
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGACTCTT3269673531.363074815232423No Hit
ACCGAACA2996794828.745591729051682No Hit
TAGACGAC2780741426.673183291852887No Hit
GTTTGTGG1162962111.15526285715678No Hit
CGACTCTA4194480.40233922454641446No Hit
GGTTGTGG2947980.2827735469422524No Hit
GTTTGTGA1702480.1633037904593131No Hit
TAGACGAA1382110.13257354085317963No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)