FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206100

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206100
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences103785399
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGACTCTT3257214631.384131403686176No Hit
ACCGAACA2979031228.70376015030785No Hit
TAGACGAC2767718226.667703035954027No Hit
GTTTGTGG1153353711.112870510812412No Hit
CGACTCTA4162510.40106894034294743No Hit
GGTTGTGG3131650.3017428299331393No Hit
GTTTGTGA1696520.16346422679359743No Hit
TAGACGAA1385170.13346482389107545No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)