FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206104

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206104
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences104227856
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGCGT3434173332.94870902841943No Hit
CAACCATC2999542528.778702883421108No Hit
TCTATTAG2650611025.430927025880685No Hit
GTGGAGCA1143558010.971711823372823No Hit
GGGGAGCA2257210.21656494593921224No Hit
CAACCATA1717630.16479567611944354No Hit
TCTATTAA1255750.1204812272066692No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)