FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206108

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206108
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences103546943
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGCGT3417691833.0062066631943No Hit
CAACCATC2968209028.665346498930443No Hit
TCTATTAG2631560425.414177606382836No Hit
GTGGAGCA1131425310.92668954987884No Hit
GGGGAGCA2481690.23966810879197079No Hit
CAACCATA1708680.1650150115972038No Hit
TCTATTAA1249600.12067956462992828No Hit
TGCTGCGT1145490.11062518765039737No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)