FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206116

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206116
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96574534
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGATCA2810035929.097069212883802No Hit
CTTCGAAT2460677225.479565865676353No Hit
AAATCGTC2179818122.571355094501413No Hit
GCGATCGG2044494121.170116130200537No Hit
GCGATCGA1929220.19976487797497425No Hit
TGTGATCA1533600.15879962723920574No Hit
AAATCGTA1304070.13503249210604526No Hit
TGCGATAA1059280.10968523026991775No Hit
CTTCGAAA996170.10315038123818439No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)