FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206120

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206120
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences100504306
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGACGGAT3125188931.09507467272099No Hit
GTCGACTC2641847726.28591555072277No Hit
CCTTTAGA2260725722.49381931954239No Hit
TAGACTCG1841646618.324056682705713No Hit
TAGACTCA2124840.21141780731265386No Hit
GTCGACTA1985830.19758655912712836No Hit
GTCGTCTC1236790.12305840905960784No Hit
CCTTTAAA1149010.11432445491439938No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)