FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206124

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206124
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99793939
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGACGGAT3109839831.16261198989249No Hit
GTCGACTC2622626026.28041368323982No Hit
CCTTTAGA2239792722.444175692874495No Hit
TAGACTCG1822327918.260907608827825No Hit
TAGACTCA2098630.21029633873856807No Hit
GTCGACTA1966040.19700996069510796No Hit
GTCGTCTC1285580.12882345489940025No Hit
CCTTTAAA1134010.11363515774239555No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)