FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206128

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206128
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63925072
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGACGGAT2028255331.72863536235047No Hit
GTCGACTC1677156026.23627862319811No Hit
CCTTTAGA1417721322.17786004214434No Hit
TAGACTCG1152335118.026340275377397No Hit
GTCGACTA1386000.21681633772739434No Hit
TAGACTCA1335790.20896182956195966No Hit
CCTTTAAA720060.11264124974313679No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)