FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206132

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206132
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64173454
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGACGGAT2035880131.724645832527575No Hit
GTCGACTC1684992926.256852249218188No Hit
CCTTTAGA1426081622.22229771207266No Hit
TAGACTCG1157140518.031451135542742No Hit
GTCGACTA1362850.21236974403777611No Hit
TAGACTCA1349370.21026918700682687No Hit
CCTTTAAA720230.11223176486651319No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)