FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206136

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206136
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences110108887
Sequences flagged as poor quality0
Sequence length8
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGTCTT3287233829.85439131720585No Hit
ATGCCAAA3211201929.163875755096864No Hit
CCTTATCG2519054922.877852720462062No Hit
TGCAGGGC1798113816.33032400009638No Hit
GAAGTCTA3263640.2964011433518532No Hit
ATGCAAAA2199780.19978223919382637No Hit
CCTTATCA2038600.18514400204590206No Hit
TGCAGGGA1116540.10140325912112798No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)