FastQCFastQC Report
Tue 28 Jun 2022
EGAF00006206144

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206144
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65137937
Sequences flagged as poor quality0
Sequence length8
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGTCTT1940625829.792558520850914No Hit
ATGCCAAA1879291128.850945954889546No Hit
CCTTATCG1465940322.505169299420704No Hit
TGCAGGGC1078304216.55416566232363No Hit
GAAGTCTA1925880.2956618045794112No Hit
ATGCCAGA1764840.2709388846625585No Hit
ATGCAAAA1364480.20947547049271764No Hit
CCTTATCA1189500.18261247665857147No Hit
TGCAGGGA724410.11121168912672195No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)