FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206148

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206148
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65424344
Sequences flagged as poor quality0
Sequence length8
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGTCTT1948160829.777307358251846No Hit
ATGCCAAA1889744528.88442412200572No Hit
CCTTATCG1475619122.55458763178428No Hit
TGCAGGGC1082151616.540503638828994No Hit
GAAGTCTA1946470.29751463767065056No Hit
ATGCCAGA1781640.27232065177451376No Hit
ATGCAAAA1346480.2058071839436403No Hit
CCTTATCA1199130.18328498639588958No Hit
TGCAGGGA713200.1090114101870093No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)