FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206172

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206172
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33181096
Sequences flagged as poor quality0
Sequence length8
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAAGAC1151054734.69007473411969No Hit
GGATGAGT1064364332.077430474267636No Hit
AATCTTTG1007446830.36207122272272No Hit
TCGGCCCA3093140.9321994668289437No Hit
GGAGGAGT1590730.4794085162226106No Hit
AATCTTTA750440.226164922340118No Hit
CTCAAGAA487430.14689990951474297No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)