FastQCFastQC Report
Fri 1 Jul 2022
EGAF00006206176

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206176
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences89109625
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGGGAC2448878227.481635120785214No Hit
TTTCTTGT2209747924.798083259804987No Hit
GGGACACA2121828223.811436755569336No Hit
ACCTACTG1991351022.347204356431753No Hit
ACCTACTA1453750.1631417481557127No Hit
TTTCTTGA1310530.14706941029097587No Hit
CAAGGGAA902310.10125842185959148No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)