FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206184

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206184
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51850854
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGGGAC1417749727.34284183631768No Hit
TTTCTTGT1277448624.63698283542254No Hit
GGGACACA1242419523.961408620193602No Hit
ACCTACTG1156257122.299673212711212No Hit
GTTCTTGT968140.18671630750768348No Hit
ACCTACTA879290.1695806206007716No Hit
TTTCTTGA761300.1468249683987847No Hit
CAAGGGAA624710.12048210430632444No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)