FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206192

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206192
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88029930
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATAACA2511907428.534697233088792No Hit
TACCCGGC2485697828.23696213321992No Hit
CTTATTTG2274989625.843364864654557No Hit
GCGGGCAT1387410015.7606623111026No Hit
CTTATTTA2014570.22885057389003946No Hit
TACCCGGA1191690.13537327588469059No Hit
GCGGGCCT970600.11025795431167558No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)