FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206196

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206196
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87831480
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATAACA2512826728.609636317183774No Hit
TACCCGGC2469234728.113322239361104No Hit
CTTATTTG2267694525.81869848942543No Hit
GCGGGCAT1385614115.775825478518634No Hit
CTTATTTA2017510.22970238005781068No Hit
TACCCGGA1174820.1337584201017676No Hit
GCGGGCCT1016550.11573868503639015No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)