FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206200

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206200
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36652659
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATAACA1045324928.51975623378375No Hit
TACCCGGC1031821628.151343671955697No Hit
CTTATTTG937175225.569091726742116No Hit
GCGGGCAT583433415.917901072334207No Hit
CTTATTTA836640.2282617476674748No Hit
GCGGGCCT637180.17384277631808376No Hit
TACCCGGA499470.13627115020495512No Hit
AGATAAAA453530.12373727101217949RNA PCR Primer, Index 35 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)