FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83462276
Sequences flagged as poor quality0
Sequence length10
%GC69

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACAGAGCCG8197160498.21395716551032No Hit
GACAGTGCCG3527320.4226244680890322No Hit
GACCGAGCCG1174210.14068751252362205No Hit
GACAGAGCAG1017190.12187422255295316No Hit
GACAGAGCCT966620.11581519775473173No Hit
GAAAGAGCCG898430.10764503953858148No Hit
GACAGAGCCC893820.10709269418916878No Hit
NACAGAGCCG850550.101908316039692No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)