FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206221

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206221
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences113972229
Sequences flagged as poor quality0
Sequence length10
%GC69

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACAGAGCCG11177466298.07183993918377No Hit
GACCGAGCCG6503660.5706355010394681No Hit
GAAAGAGCCG2259190.19822284953293312No Hit
GACAGATCCG1686680.14799043721431474No Hit
NACAGAGCCG1260890.11063133634071508No Hit
GACAGAGCAG1145190.10047974055153383No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)