FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206224

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206224
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71747425
Sequences flagged as poor quality0
Sequence length10
%GC69

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTTCTCG7051256698.2788803918747No Hit
CCCGTTCTCA3245710.45237999830655945No Hit
CCCGGTCTCG1449290.20199888706807248No Hit
CCCGTTATCG1333800.18590214213262704No Hit
CACGTTCTCG1187090.16545402152063296No Hit
CCCGTTCTAG840170.11710106669333428No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)