FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206228

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206228
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71643541
Sequences flagged as poor quality0
Sequence length10
%GC69

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTTCTCG7045076498.33512277122092No Hit
CCCGTTCTCA3263540.4555246648124218No Hit
CCCGGTCTCG1339980.1870343064143075No Hit
CCCGTTATCG1153240.16096915142706306No Hit
CACGTTCTCG1128150.1574670911366595No Hit
CCCGTTCTAG732880.10229533462060453No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)