FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206233

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206233
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91550336
Sequences flagged as poor quality0
Sequence length10
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAATCCGTC9036743898.70792609652464No Hit
CCACTCCGTC1374550.1501414478697271No Hit
CCAATACGTC1122890.12265274482444281No Hit
ACAATCCGTC1066700.11651513763969146No Hit
CCAATCCGTA969750.10592533488899485No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)