FastQCFastQC Report
Tue 28 Jun 2022
EGAF00006206240

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206240
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68747200
Sequences flagged as poor quality0
Sequence length10
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTTTCCTGG6743858098.09647520189914No Hit
AGTTTCCTGA3367330.48981340330951656No Hit
CGTTTCCTGG1539980.224006214071264No Hit
AGATTCCTGG1185860.17249575255428584No Hit
AGTTTCATGG1126410.1638481276328345No Hit
TGTTTCCTGG793920.11548397607466195No Hit
AGTTACCTGG706390.10275182116508018No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)