FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206241

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206241
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68747200
Sequences flagged as poor quality0
Sequence length10
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTGTGGCA6770326598.48148724602602No Hit
CTGGGTGGCA1500910.21832307352153976No Hit
CTGTGTGGAA1066090.15507395210277655No Hit
ATGTGTGGCA1024120.14896897619103033No Hit
NTGTGTGGCA719930.104721355924314No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)