FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206245

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206245
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68988736
Sequences flagged as poor quality0
Sequence length10
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTGTGGCA6803308898.61477676587668No Hit
CTGGGTGGCA1343210.1946998999952688No Hit
ATGTGTGGCA940010.13625557656252754No Hit
CTGTGTGGAA855550.12401299829583774No Hit
NTGTGTGGCA830270.12034863198537223No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)