FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206248

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206248
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123783924
Sequences flagged as poor quality0
Sequence length10
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTTTCCTGG12185905798.44497820250068No Hit
AGTTTCCTGA6247750.5047303234626817No Hit
AGTTTCATGG2063600.1667098548273522No Hit
AGTTTCCTTG1397640.11290965376085507No Hit
AGTTACCTGG1304120.10535455314859789No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)