FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206249

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206249
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123783924
Sequences flagged as poor quality0
Sequence length10
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTGTGGCA12155956298.2030283673993No Hit
CTGTGTGTCA2151120.17378023983146632No Hit
CTGTGAGGCA2037160.16457387471413493No Hit
ATGTGTGGCA1789690.14458177945627254No Hit
CTGTGTGGAA1630140.13169238357640045No Hit
CTGTTTGGCA1613650.1303602235133538No Hit
GTGTGTGGCA1490240.12039043131319702No Hit
CAGTGTGGCA1481760.11970536658702143No Hit
CGGTGTGGCA1329900.10743721454491942No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)